PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223917.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 240aa    MW: 25131 Da    PI: 10.5419
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223917.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.17.7e-3937179289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                     a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s  ++++ss+        
  XP_008223917.1  37 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGAPSSSapssttts 130
                     78**************************************************************99999766.4444444443333333444555 PP

             TCP  89 ................................................k 89 
                                                                     +
  XP_008223917.1 131 dhkphllggptpsmpsvlgptagvpgafwaphfgqvwsfaatpppemmA 179
                     5566777777777777777777777777777777777777777765542 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2094397IPR017887Transcription factor TCP subgroup
PfamPF036343.0E-3443180IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSNSEAPNNE LTNGGGGGGG MVEQQASQRP SSNGVLAVKK PPSKDRHSKV DGRGRRIRMP  60
IICAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTV SVSLRGGAPS  120
SSAPSSTTTS DHKPHLLGGP TPSMPSVLGP TAGVPGAFWA PHFGQVWSFA ATPPPEMMAQ  180
SAVSHQQHQQ QQQHSLFLQQ QPMGEASAAR VGNYLPGHLN LLASLSGGHG NSGRREDDPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407981e-72AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047761e-72AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149581e-72AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-72CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223917.11e-174PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX22e-79TCP7_ARATH; Transcription factor TCP7
TrEMBLD9ZJD51e-127D9ZJD5_MALDO; TCP domain class transcription factor
STRINGGLYMA10G43190.11e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-64TCP family protein